Find Research outputs

2004

Computational methods for prediction of T-cell epitopes - A framework for modelling, testing, and applications

Brusic, V., Bajic, V. B. & Petrovsky, N., Dec 2004, In: Methods. 34, 4, p. 436-443 8 p.

Research output: Journal Publication › Article › peer-review

144 Citations (Scopus)

Crystal Structure of a Human VH: Requirements for Maintaining a Monomeric Fragment

Dottorini, T., Vaughan, C. K., Walsh, M. A., LoSurdo, P. & Sollazzo, M., 27 Jan 2004, In: Biochemistry. 43, 3, p. 622-628 7 p.

Research output: Journal Publication › Article › peer-review

21 Citations (Scopus)

Domestic risk factors for wheeze in urban and rural Ethiopian children

Dagoye, D., Bekele, Z., Woldemichael, K., Nida, H., Yimam, M., Venn, A. J., Hall, A., Britton, J. R., Lewis, S. A., Mckeever, T. & Hubbard, R., Aug 2004, In: QJM - Monthly Journal of the Association of Physicians. 97, 8, p. 489-498 10 p.

Research output: Journal Publication › Article › peer-review

Open Access

27 Citations (Scopus)

Dupuytren's disease risk factors

Geoghegan, J. M., Forbes, J., Clark, D. I., Smith, C. & Hubbard, R., Oct 2004, In: Journal of Hand Surgery. 29, 5, p. 423-426 4 p.

Research output: Journal Publication › Article › peer-review

Open Access

112 Citations (Scopus)

Hip fractures in patients with inflammatory bowel disease and their relationship to corticosteroid use: A population based cohort study

Card, T., West, J., Hubbard, R. & Logan, R. F. A., Feb 2004, In: Gut. 53, 2, p. 251-255 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

136 Citations (Scopus)

Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system

Silva, D. G., Schönbach, C., Brusic, V., Socha, L. A., Nagashima, T. & Petrovsky, N., 29 Apr 2004, In: BMC Genomics. 5, 28.

Research output: Journal Publication › Article › peer-review

Open Access

6 Citations (Scopus)

Inhaled corticosteroids, bone mineral density and fracture in older people

Hubbard, R. & Tattersfield, A., 2004, In: Drugs and Aging. 21, 10, p. 631-638 8 p.

Research output: Journal Publication › Review article › peer-review

15 Citations (Scopus)

Malignancy and mortality in people with coeliac disease: Population based cohort study

West, J., Logan, R. F. A., Smith, C. J., Hubbard, R. B. & Card, T. R., 25 Sept 2004, In: The BMJ. 329, 7468, p. 716-718 3 p.

Research output: Journal Publication › Article › peer-review

Open Access

324 Citations (Scopus)

Mortality in inflammatory bowel disease is increased in the United Kingdom

Card, T., Hubbard, R., Logan, R. F. A. & Loftus, E. V., Nov 2004, In: Evidence-Based Gastroenterology. 5, 4, p. 114-115 2 p.

Research output: Journal Publication › Short survey › peer-review

New technologies for vaccine development

Srinivasan, K. N., Brusic, V. & August, T. J., Aug 2004, In: Drug Development Research. 62, 4, p. 383-392 10 p.

Research output: Journal Publication › Article › peer-review

10 Citations (Scopus)

Novel and recurrent mutations in the NF1 gene in Italian patients with neurofibromatosis type 1.

De Luca, A., Schirinzi, A., Buccino, A., Bottillo, I., Sinibaldi, L., Torrente, I., Ciavarella, A., Dottorini, T., Porciello, R., Giustini, S., Calvieri, S. & Dallapiccola, B., Jun 2004, In: Human mutation. 23, 6, p. 629 1 p.

Research output: Journal Publication › Article › peer-review

Open Access

50 Citations (Scopus)

Optimism across cultures: In response to the severe acute respiratory syndrome outbreak

Ji, L. J., Zhang, Z., Usborne, E. & Guan, Y., Apr 2004, In: Asian Journal of Social Psychology. 7, 1, p. 25-34 10 p.

Research output: Journal Publication › Article › peer-review

112 Citations (Scopus)

Pathogenic human thyroglobulin peptides in HLA-DR3 transgenic mouse model of autoimmune thyroiditis

Flynn, J. C., McCormick, D. J., Brusic, V., Wan, Q., Panos, J. C., Giraldo, A. A., David, C. S. & Kong, Y. C. M., Jun 2004, In: Cellular Immunology. 229, 2, p. 79-85 7 p.

Research output: Journal Publication › Article › peer-review

36 Citations (Scopus)

Prediction of class I T-cell epitopes: Evidence of presence of immunological hot spots inside antigens

Srinivasan, K. N., Zhang, G. L., Khan, A. M., August, J. T. & Brusic, V., 2004, In: Bioinformatics. 20, SUPPL. 1, p. i297-i302

Research output: Journal Publication › Article › peer-review

Open Access

35 Citations (Scopus)

Risk factors in carpal tunnel syndrome

Geoghegan, J. M., Clark, D. I., Bainbridge, L. C., Smith, C. & Hubbard, R., Aug 2004, In: Journal of Hand Surgery. 29, 4, p. 315-320 6 p.

Research output: Journal Publication › Article › peer-review

272 Citations (Scopus)

Risk of myocardial infarction and stroke after acute infection or vaccination

Smeeth, L., Thomas, S. L., Hall, A. J., Hubbard, R., Farrington, P. & Vallance, P., 16 Dec 2004, In: New England Journal of Medicine. 351, 25, p. 2611-2618 8 p.

Research output: Journal Publication › Article › peer-review

Open Access

1192 Citations (Scopus)

Risk of vascular disease in adults with diagnosed coeliac disease: A population-based study

West, J., Logan, R. F. A., Card, T. R., Smith, C. & Hubbard, R., 1 Jul 2004, In: Alimentary Pharmacology and Therapeutics. 20, 1, p. 73-79 7 p.

Research output: Journal Publication › Article › peer-review

Open Access

128 Citations (Scopus)

Safety of inhaled corticosteroids.

Tattersfield, A. E., Harrison, T. W., Hubbard, R. B. & Mortimer, K., 2004, In: Proceedings of the American Thoracic Society. 1, 3, p. 171-175 5 p.

Research output: Journal Publication › Review article › peer-review

64 Citations (Scopus)

Study on performance of RTM process and braided composites of bismaleimide resin

Li, X. G., Li, H. Y., Hu, H. J. & Yi, X. S., Sept 2004, In: Cailiao Gongcheng/Journal of Materials Engineering. 9, p. 52-56 5 p.

Research output: Journal Publication › Article › peer-review

Survival and disease progression in UK patients with lymphangioleiomyomatosis

Johnson, S. R., Whale, C. I., Hubbard, R. B., Lewis, S. A. & Tattersfield, A. E., Sept 2004, In: Thorax. 59, 9, p. 800-803 4 p.

Research output: Journal Publication › Article › peer-review

Open Access

146 Citations (Scopus)

The changing field of vaccine development in the genomics era

Brusic, V. & August, J. T., Sept 2004, In: Pharmacogenomics. 5, 6, p. 597-600 4 p.

Research output: Journal Publication › Article › peer-review

30 Citations (Scopus)

The developing story of antioxidants and asthma

Hubbard, R. & Fogarty, A., Jan 2004, In: Thorax. 59, 1, p. 3-4 2 p.

Research output: Journal Publication › Editorial

13 Citations (Scopus)

The HUPO PSI's Molecular Interaction format - A community standard for the representation of protein interaction data

Hermjakob, H., Montecchi-Palazzi, L., Bader, G., Wojcik, J., Salwinski, L., Ceol, A., Moore, S., Orchard, S., Sarkans, U., Von Mering, C., Roechert, B., Poux, S., Jung, E., Mersch, H., Kersey, P., Lappe, M., Li, Y., Zeng, R., Rana, D. & Nikolski, M. & 19 others, Husi, H., Brun, C., Shanker, K., Grant, S. G. N., Sander, C., Bork, P., Zhu, W., Pandey, A., Brazma, A., Jacq, B., Vidal, M., Sherman, D., Legrain, P., Cesareni, G., Xenarios, I., Eisenberg, D., Steipe, B., Hogue, C. & Apweiler, R., Feb 2004, In: Nature Biotechnology. 22, 2, p. 177-183 7 p.

Research output: Journal Publication › Review article › peer-review

527 Citations (Scopus)

Toll-like receptor (TLR) 4 polymorphisms and COPD [2]

Sabroe, I., Whyte, M. K. B., Wilson, A. G., Dower, S. K., Hubbard, R. & Hall, I., Jan 2004, In: Thorax. 59, 1, p. 81 1 p.

Research output: Journal Publication › Letter › peer-review

27 Citations (Scopus)

Vaccination and allergic disease: A birth cohort study

McKeever, T. M., Lewis, S. A., Smith, C. & Hubbard, R., Jun 2004, In: American Journal of Public Health. 94, 6, p. 985-989 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

84 Citations (Scopus)

Virtual models of the HLA class I antigen processing pathway

Petrovsky, N. & Brusic, V., Dec 2004, In: Methods. 34, 4, p. 429-435 7 p.

Research output: Journal Publication › Article › peer-review

30 Citations (Scopus)

2003

A population based case-control study of cataract and inhaled corticosteroids

Smeeth, L., Boulis, M., Hubbard, R. & Fletcher, A. E., 1 Oct 2003, In: British Journal of Ophthalmology. 87, 10, p. 1247-1251 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

95 Citations (Scopus)

Bioinformatics for characterisation of allergens, allergenicity and allergic crossreactivity

Brusic, V. & Petrovsky, N., 1 May 2003, In: Trends in Immunology. 24, 5, p. 225-228 4 p.

Research output: Journal Publication › Review article › peer-review

26 Citations (Scopus)

Detecting chronic obstructive pulmonary disease using peak flow rate: Cross sectional survey

Jackson, H. & Hubbard, R., 20 Sept 2003, In: The BMJ. 327, 7416, p. 653-654 2 p.

Research output: Journal Publication › Short survey › peer-review

Open Access

85 Citations (Scopus)

Does influenza vaccination increase consultations, corticosteroid prescriptions, or exacerbations in subjects with asthma or chronic obstructive pulmonary disease?

Tata, L. J., West, J., Harrison, T., Farrington, P., Smith, C. & Hubbard, R., 1 Oct 2003, In: Thorax. 58, 10, p. 835-839 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

60 Citations (Scopus)

Epidemiology of idiopathic pulmonary fibrosis

Coultas, D. B. & Hubbard, R., 1 Jan 2003, Idiopathic Pulmonary Fibrosis. CRC Press, p. 1-30 30 p.

Research output: Chapter in Book/Conference proceeding › Book Chapter › peer-review

10 Citations (Scopus)

Exposure to tricyclic and selective serotonin reuptake inhibitor antidepressants and the risk of hip fracture

Hubbard, R., Farrington, P., Smith, C., Smeeth, L. & Tattersfield, A., 1 Jul 2003, In: American Journal of Epidemiology. 158, 1, p. 77-84 8 p.

Research output: Journal Publication › Article › peer-review

Open Access

177 Citations (Scopus)

Fatal pneumocystis carinii pneumonia as a complication of methotrexate in rheumatoid arthritis

Suleman, M., Chaudri, M. B., Deighton, C. & Hubbard, R. B., 2003, In: CPD Journal Acute Medicine. 2, 1, p. 25-26 2 p.

Research output: Journal Publication › Article › peer-review

Fracture risk in people with celiac disease: A population-based cohort study

West, J., Logan, R. F. A., Card, T. R., Smith, C. & Hubbard, R., 1 Aug 2003, In: Gastroenterology. 125, 2, p. 429-436 8 p.

Research output: Journal Publication › Article › peer-review

185 Citations (Scopus)

Inhaled corticosteroids and hip fracture: Disease or drugs? [2] (multiple letters)

Van Staa, T. P., Leufkens, H. G. M., Cooper, C., Hubbard, R. B., Harrison, T. W., Tattersfield, A. E. & Smeeth, L., 1 Jul 2003, In: American Journal of Respiratory and Critical Care Medicine. 168, 1, p. 128-129 2 p.

Research output: Journal Publication › Letter › peer-review

6 Citations (Scopus)

MAGE-6 encodes HLA-DRβ1*0401-presented Epitopes recognized by CD4+ T cells from patients with melanoma or renal cell carcinoma

Tatsumi, T., Kierstead, L. S., Ranieri, E., Gesualdo, L., Schena, F. P., Finke, J. H., Bukowski, R. M., Brusic, V., Sidney, J., Sette, A., Logan, T. F., Kasamon, Y. L., Slingluff, C. L., Kirkwood, J. M. & Storkus, W. J., 1 Mar 2003, In: Clinical Cancer Research. 9, 3, p. 947-954 8 p.

Research output: Journal Publication › Article › peer-review

56 Citations (Scopus)

Molecular evolution and phylogeny of elapid snake venom three-finger toxins

Fry, B. G., Wüster, W., Kini, R. M., Brusic, V., Khan, A., Venkataraman, D. & Rooney, A. P., 1 Jul 2003, In: Journal of Molecular Evolution. 57, 1, p. 110-129 20 p.

Research output: Journal Publication › Article › peer-review

Open Access

300 Citations (Scopus)

Mortality in Inflammatory Bowel Disease: A Population-Based Cohort Study

Card, T., Hubbard, R. & Logan, R. F. A., Dec 2003, In: Gastroenterology. 125, 6, p. 1583-1590 8 p.

Research output: Journal Publication › Article › peer-review

Open Access

142 Citations (Scopus)

Occupational exposure to metals and solvents and the risk of motor neuron disease: A case-control study

Gait, R., Maginnis, C., Lewis, S., Pickering, N., Antoniak, M., Hubbard, R., Lawson, I. & Britton, J., 2003, In: Neuroepidemiology. 22, 6, p. 353-356 4 p.

Research output: Journal Publication › Article › peer-review

24 Citations (Scopus)

Occupational exposure to solvents and metals and Parkinson's disease

McDonnell, L., Maginnis, C., Lewis, S., Pickering, N., Antoniak, M., Hubbard, R., Lawson, I. & Britton, J., 9 Sept 2003, In: Neurology. 61, 5, p. 716-717 2 p.

Research output: Journal Publication › Article › peer-review

41 Citations (Scopus)

Prenatal antibiotic exposure and subsequent atopy [4] (multiple letters)

Thomas, M., Price, D., McKeever, T., Lewis, S. & Hubbard, R., 1 Jun 2003, In: American Journal of Respiratory and Critical Care Medicine. 167, 11, p. 1578-1579 2 p.

Research output: Journal Publication › Letter › peer-review

10 Citations (Scopus)

Seroprevalence, correlates, and characteristics of undetected coeliac disease in England

West, J., Logan, R. F. A., Hill, P. G., Lloyd, A., Lewis, S., Hubbard, R., Reader, R., Holmes, G. K. T. & Khaw, K. T., 1 Jul 2003, In: Gut. 52, 7, p. 960-965 6 p.

Research output: Journal Publication › Article › peer-review

Open Access

443 Citations (Scopus)

The dynamics and characteristics of aeolian dust in dryland Central Asia: Possible impacts on human exposure and respiratory health in the Aral Sea basin

Wiggs, G. F. S., O'Hara, S. L., Wegerdt, J., van der Meer, J., Small, I. & Hubbard, R., Jun 2003, In: Geographical Journal. 2, p. 142-157 16 p.

Research output: Journal Publication › Article › peer-review

126 Citations (Scopus)

The future for computational modelling and prediction systems in clinical immunology

Petrovsky, N., Silva, D. & Brusic, V., 2003, In: Novartis Foundation Symposium. 254, p. 23-42 20 p.

Research output: Journal Publication › Article › peer-review

4 Citations (Scopus)

The INSL3-LGR8/GREAT ligand-receptor pair in human cryptorchidism

Ferlin, A., Simonato, M., Bartoloni, L., Rizzo, G., Bettella, A., Dottorini, T., Dallapiccola, B. & Foresta, C., 1 Sept 2003, In: Journal of Clinical Endocrinology and Metabolism. 88, 9, p. 4273-4279 7 p.

Research output: Journal Publication › Article › peer-review

Open Access

122 Citations (Scopus)

There is no evidence of an inverse relationship between T_H2-mediated atopy and T_H1-mediated autoimmune disorders: Lack of support for the hygiene hypothesis

Sheikh, A., Smeeth, L. & Hubbard, R., 1 Jan 2003, In: Journal of Allergy and Clinical Immunology. 111, 1, p. 131-135 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

140 Citations (Scopus)

Wheezing, allergy, and parasite infection in children in urban and rural ethiopia

Dagoye, D., Bekele, Z., Woldemichael, K., Nida, H., Yimam, M., Hall, A., Venn, A. J., Britton, J. R., Hubbard, R. & Lewis, S. A., 15 May 2003, In: American Journal of Respiratory and Critical Care Medicine. 167, 10, p. 1369-1373 5 p.

Research output: Journal Publication › Article › peer-review

159 Citations (Scopus)

2002

Adoption of telemedicine technology by health care organizations: An exploratory study

Hu, P. J. H., Chau, P. Y. K. & Liu Sheng, O. R., 2002, In: Journal of Organizational Computing and Electronic Commerce. 12, 3, p. 197-221 25 p.

Research output: Journal Publication › Article › peer-review

Open Access

114 Citations (Scopus)

American thoracic society/European respiratory society international multidisciplinary consensus classification of the idiopathic interstitial pneumonias

Travis, W. D., King, T. E., Bateman, E. D., Lynch, D. A., Capron, F., Center, D., Colby, T. V., Cordier, J. F., DuBois, R. M., Galvin, J., Grenier, P., Hansell, D. M., Hunninghake, G. W., Kitaichi, M., Müller, N. L., Myers, J. L., Nagai, S., Nicholson, A., Raghu, G. & Wallaert, B. & 64 others, Brambilla, C. G., Brown, K. K., Cherniaev, A. L., Costabel, U., Coultas, D. B., Davis, G. S., Demedts, M. G., Douglas, W. W., Egan, J., Eklund, A. G., Fabbri, L. M., Henke, C. A., Hubbard, R. B., Inoue, Y., Izumi, T., Jansen, H. M., Johnston, I., Kim, D. S., Khalil, N., Lake, F. R., Lungarella, G., Lynch, J. P., Mapel, D. W., Martinez, F., Matthay, R., Newman, L. S., Noble, P. W., Ohta, K., Olivieri, D., Ortiz, L. A., Poletti, V., Rodriguez-Roisin, R., Rom, W. N., Ryu, J. H., Saldiva, P., Sansores, R. H., Schwarz, M. L., Selman, M., Smith, C. M., Tong, Z., Udwadia, Z., Valeyre, D., Wells, A., Wise, R. A., Xaubet, A., Alvarez Fernandez, E., Brambilla, E., Capelozzi, V., Cherniaev, A., Dalquen, P., Dekan, G., Hasleton, P. S., Hogg, J. C., Jambhekar, N. A., Katzenstein, A. L., Koss, M. N., Matsubara, O., Müller, K. M., Thunnissen, F. B. J. M., Waldron, J. A., Li, W. H., Friedman, P. J., Remy-Jardin, M. & McLoud, T. C., 15 Jan 2002, In: American Journal of Respiratory and Critical Care Medicine. 165, 2, p. 277-304 28 p.

Research output: Journal Publication › Article › peer-review

3675 Citations (Scopus)

Cholera toxin B subunit labeling in lamina II of spinal cord dorsal horn following chronic inflammation in rats

Ma, Q. P. & Tian, L., 26 Jul 2002, In: Neuroscience Letters. 327, 3, p. 161-164 4 p.

Research output: Journal Publication › Article › peer-review

8 Citations (Scopus)

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