Find Research outputs

2017

Systems biology approach in hypertension research

Delles, C. & Holger, H., 2017, Methods in Molecular Biology. Humana Press Inc., p. 69-79 11 p. (Methods in Molecular Biology; vol. 1527).

Research output: Chapter in Book/Conference proceeding › Book Chapter › peer-review

6 Citations (Scopus)

Tissue proteomics in vascular disease

Albalat, A., Mullen, W., Husi, H. & Mischak, H., 2017, Methods in Molecular Biology. Humana Press Inc., p. 53-60 8 p. (Methods in Molecular Biology; vol. 1527).

Research output: Chapter in Book/Conference proceeding › Book Chapter › peer-review

1 Citation (Scopus)

2016

Exploring morphological generality in the Old World monkey postcranium using an ecomorphological framework

Elton, S., Jansson, A. U., Meloro, C., Louys, J., Plummer, T. & Bishop, L. C., 1 Apr 2016, In: Journal of Anatomy. 228, 4, p. 534-560 27 p.

Research output: Journal Publication › Article › peer-review

Open Access

25 Citations (Scopus)

Streptomyces humi sp. nov., an actinobacterium isolated from soil of a mangrove forest

Zainal, N., Ser, H. L., Yin, W. F., Tee, K. K., Lee, L. H. & Chan, K. G., 1 Mar 2016, In: Antonie van Leeuwenhoek. 109, 3, p. 467-474 8 p.

Research output: Journal Publication › Article › peer-review

24 Citations (Scopus)

Understanding the structural features of high-amylose maize starch through hydrothermal treatment

Yang, J., Xie, F., Wen, W., Chen, L., Shang, X. & Liu, P., 1 Mar 2016, In: International Journal of Biological Macromolecules. 84, p. 268-274 7 p.

Research output: Journal Publication › Article › peer-review

Open Access

55 Citations (Scopus)

2015

Advances in molecular quantum chemistry contained in the Q-Chem 4 program package

Shao, Y., Gan, Z., Epifanovsky, E., Gilbert, A. T. B., Wormit, M., Kussmann, J., Lange, A. W., Behn, A., Deng, J., Feng, X., Ghosh, D., Goldey, M., Horn, P. R., Jacobson, L. D., Kaliman, I., Khaliullin, R. Z., Kus̈, T., Landau, A., Liu, J. & Proynov, E. I. & 137 others, Rhee, Y. M., Richard, R. M., Rohrdanz, M. A., Steele, R. P., Sundstrom, E. J., Woodcock, H. L., Zimmerman, P. M., Zuev, D., Albrecht, B., Alguire, E., Austin, B., Beran, G. J. O., Bernard, Y. A., Berquist, E., Brandhorst, K., Bravaya, K. B., Brown, S. T., Casanova, D., Chang, C. M., Chen, Y., Chien, S. H., Closser, K. D., Crittenden, D. L., Diedenhofen, M., Distasio, R. A., Do, H., Dutoi, A. D., Edgar, R. G., Fatehi, S., Fusti-Molnar, L., Ghysels, A., Golubeva-Zadorozhnaya, A., Gomes, J., Hanson-Heine, M. W. D., Harbach, P. H. P., Hauser, A. W., Hohenstein, E. G., Holden, Z. C., Jagau, T. C., Ji, H., Kaduk, B., Khistyaev, K., Kim, J., Kim, J., King, R. A., Klunzinger, P., Kosenkov, D., Kowalczyk, T., Krauter, C. M., Lao, K. U., Laurent, A. D., Lawler, K. V., Levchenko, S. V., Lin, C. Y., Liu, F., Livshits, E., Lochan, R. C., Luenser, A., Manohar, P., Manzer, S. F., Mao, S. P., Mardirossian, N., Marenich, A. V., Maurer, S. A., Mayhall, N. J., Neuscamman, E., Oana, C. M., Olivares-Amaya, R., Oneill, D. P., Parkhill, J. A., Perrine, T. M., Peverati, R., Prociuk, A., Rehn, D. R., Rosta, E., Russ, N. J., Sharada, S. M., Sharma, S., Small, D. W., Sodt, A., Stein, T., Stück, D., Su, Y. C., Thom, A. J. W., Tsuchimochi, T., Vanovschi, V., Vogt, L., Vydrov, O., Wang, T., Watson, M. A., Wenzel, J., White, A., Williams, C. F., Yang, J., Yeganeh, S., Yost, S. R., You, Z. Q., Zhang, I. Y., Zhang, X., Zhao, Y., Brooks, B. R., Chan, G. K. L., Chipman, D. M., Cramer, C. J., Goddard, W. A., Gordon, M. S., Hehre, W. J., Klamt, A., Schaefer, H. F., Schmidt, M. W., Sherrill, C. D., Truhlar, D. G., Warshel, A., Xu, X., Aspuru-Guzik, A., Baer, R., Bell, A. T., Besley, N. A., Chai, J. D., Dreuw, A., Dunietz, B. D., Furlani, T. R., Gwaltney, S. R., Hsu, C. P., Jung, Y., Kong, J., Lambrecht, D. S., Liang, W., Ochsenfeld, C., Rassolov, V. A., Slipchenko, L. V., Subotnik, J. E., Van Voorhis, T., Herbert, J. M., Krylov, A. I., Gill, P. M. W. & Head-Gordon, M., 17 Jan 2015, In: Molecular Physics. 113, 2, p. 184-215 32 p.

Research output: Journal Publication › Article › peer-review

Open Access

2618 Citations (Scopus)

An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression

Vandewater, L., Brusic, V., Wilson, W., Macaulay, L. & Zhang, P., 9 Dec 2015, In: BMC Bioinformatics. 16, 18, S1.

Research output: Journal Publication › Article › peer-review

Open Access

27 Citations (Scopus)

Functional amyloids keep quorum-sensing molecules in check

Seviour, T., Hansen, S. H., Yang, L., Yau, Y. H., Wang, V. B., Stenvang, M. R., Christiansen, G., Marsili, E., Givskov, M., Chen, Y., Otzen, D. E., Nielsen, P. H., Geifman-Shochat, S., Kjelleberg, S. & Dueholm, M. S., 6 Mar 2015, In: Journal of Biological Chemistry. 290, 10, p. 6457-6469 13 p.

Research output: Journal Publication › Article › peer-review

Open Access

73 Citations (Scopus)

Methods in capillary electrophoresis coupled to mass spectrometry for the identification of clinical proteomic/peptidomic biomarkers in biofluids

Stalmach, A., Husi, H., Mosbahi, K., Albalat, A., Mullen, W. & Mischak, H., 2015, In: Methods in Molecular Biology. 1243, p. 187-205 19 p.

Research output: Journal Publication › Article › peer-review

20 Citations (Scopus)

Streptomyces gilvigriseus sp. nov., a novel actinobacterium isolated from mangrove forest soil

Ser, H. L., Zainal, N., Palanisamy, U. D., Goh, B. H., Yin, W. F., Chan, K. G. & Lee, L. H., 22 Jun 2015, In: Antonie van Leeuwenhoek. 107, 6, p. 1369-1378 10 p., 1.

Research output: Journal Publication › Article › peer-review

38 Citations (Scopus)

2014

Capillary electrophoresis interfaced with a mass spectrometer (CE-MS): Technical considerations and applicability for biomarker studies in animals

Albalat, A., Husi, H., Siwy, J., Nally, J. E., McLauglin, M., Eckersall, P. D. & Mullen, W., Jan 2014, In: Current Protein and Peptide Science. 15, 1, p. 23-35 13 p.

Research output: Journal Publication › Review article › peer-review

13 Citations (Scopus)

Disruption of helix-capping residues 671 and 674 reveals a role in HIV-1 entry for a specialized hinge segment of the membrane proximal external region of gp41

Sun, Z. Y. J., Cheng, Y., Kim, M., Song, L., Choi, J., Kudahl, U. J., Brusic, V., Chowdhury, B., Yu, L., Seaman, M. S., Bellot, G., Shih, W. M., Wagner, G. & Reinherz, E. L., 6 Mar 2014, In: Journal of Molecular Biology. 426, 5, p. 1095-1108 14 p.

Research output: Journal Publication › Article › peer-review

Open Access

36 Citations (Scopus)

The antibacterial toxin colicin N binds to the inner core of lipopolysaccharide and close to its translocator protein

Johnson, C. L., Ridley, H., Marchetti, R., Silipo, A., Griffin, D. C., Crawford, L., Bonev, B., Molinaro, A. & Lakey, J. H., May 2014, In: Molecular Microbiology. 92, 3, p. 440-452 13 p.

Research output: Journal Publication › Article › peer-review

Open Access

35 Citations (Scopus)

2013

A combinatorial approach of Proteomics and Systems Biology in unravelling the mechanisms of acute kidney injury (AKI): Involvement of NMDA receptor GRIN1 in murine AKI

Husi, H., Sanchez-Niño, M. D., Delles, C., Mullen, W., Vlahou, A., Ortiz, A. & Mischak, H., 30 Oct 2013, In: BMC Systems Biology. 7, 110.

Research output: Journal Publication › Article › peer-review

Open Access

34 Citations (Scopus)

A low-molecular-weight ferroxidase is increased in the CSF of sCJD cases: CSF ferroxidase and transferrin as diagnostic biomarkers for sCJD

Haldar, S., Beveridge, '. J., Wong, J., Singh, A., Galimberti, D., Borroni, B., Zhu, X., Blevins, J., Greenlee, J., Perry, G., Mukhopadhyay, C. K., Schmotzer, C. & Singh, N., 2013, In: Antioxidants and Redox Signaling. 19, 14, p. 1662-1675 14 p.

Research output: Journal Publication › Article › peer-review

Open Access

18 Citations (Scopus)

Cell culture using centrifugal microfluidic platform with demonstration on Pichia pastoris

Ren, Y., Chow, L. M. C. & Leung, W. W. F., Apr 2013, In: Biomedical Microdevices. 15, 2, p. 321-337 17 p.

Research output: Journal Publication › Article › peer-review

18 Citations (Scopus)

Computational vaccinology and the ICoVax 2012 workshop

He, Y., Cao, Z., De Groot, A. S., Brusic, V., Schönbach, C. & Petrovsky, N., 8 Mar 2013, In: BMC Bioinformatics. 14, SUPPL4, I1.

Research output: Journal Publication › Article › peer-review

Open Access

11 Citations (Scopus)

Improving peptide relative quantification in MALDI-TOF MS for biomarker assessment

Albalat, A., Stalmach, A., Bitsika, V., Siwy, J., Schanstra, J. P., Petropoulos, A. D., Vlahou, A., Jankowski, J., Persson, F., Rossing, P., Jaskolla, T. W., Mischak, H. & Husi, H., Oct 2013, In: Proteomics. 13, 20, p. 2967-2975 9 p.

Research output: Journal Publication › Article › peer-review

Open Access

21 Citations (Scopus)

Regulation of Anopheles gambiae male accessory gland genes influences postmating response in female

Dottorini, T., Persampieri, T., Palladino, P., Baker, D. A., Spaccapelo, R., Senin, N. & Crisanti, A., Jan 2013, In: FASEB Journal. 27, 1, p. 86-97 12 p.

Research output: Journal Publication › Article › peer-review

Open Access

15 Citations (Scopus)

2012

Activation of the innate immune response and interferon signalling in myotonic dystrophy type 1 and type 2 cataracts

Rhodes, J. D., Lott, M. C., Russell, S. L., Moulton, V., Sanderson, J., Wormstone, I. M. & Broadway, D. C., Feb 2012, In: Human Molecular Genetics. 21, 4, p. 852-862 11 p., ddr515.

Research output: Journal Publication › Article › peer-review

Open Access

39 Citations (Scopus)

Analysis of Antarctic protobacteria by PCR fingerprinting and screening for antimicrobial secondary metabolites

Lee, L. H., Cheah, Y. K., Nurul Syakima, A. M., Shiran, M. S., Tang, Y. L., Lin, H. P. & Hong, K., 2012, In: Genetics and Molecular Research. 11, 2, p. 1627-1641 15 p.

Research output: Journal Publication › Article › peer-review

Open Access

16 Citations (Scopus)

Identification of actinomycete communities in Antarctic soil from Barrientos Island using PCR-denaturing gradient gel electrophoresis.

Learn-Han, L., Yoke-Kqueen, C., Shiran, M. S., Vui-Ling, C. M., Nurul-Syakima, A. M., Son, R. & Andrade, H. M., 2012, In: Genetics and Molecular Research. 11, 1, p. 277-291 15 p.

Research output: Journal Publication › Article › peer-review

Open Access

13 Citations (Scopus)

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.

Schönbach, C., Tongsima, S., Chan, J., Brusic, V., Tan, T. W. & Ranganathan, S., 2012, In: Unknown Journal. 13 Suppl 17, p. S1 S1.

Research output: Journal Publication › Article › peer-review

Open Access

1 Citation (Scopus)

2011

Can a simple proteomics urine test assist in the early diagnosis of early-stage cancer?

Husi, H., Fearon, K. C. & Ross, J. A., Oct 2011, In: Expert Review of Proteomics. 8, 5, p. 555-557 3 p.

Research output: Journal Publication › Review article › peer-review

6 Citations (Scopus)

Database Resources for Proteomics-Based Analysis of Cancer

Zhang, G. L., DeLuca, D. S. & Brusic, V., 2011, Methods in Molecular Biology. Humana Press Inc., p. 349-364 16 p. (Methods in Molecular Biology; vol. 723).

Research output: Chapter in Book/Conference proceeding › Book Chapter › peer-review

7 Citations (Scopus)

Data Processing and Analysis for Protein Microarrays

DeLuca, D. S., Marina, O., Ray, S., Zhang, G. L., Wu, C. J. & Brusic, V., 2011, Methods in Molecular Biology. Humana Press Inc., p. 337-347 11 p. (Methods in Molecular Biology; vol. 723).

Research output: Chapter in Book/Conference proceeding › Book Chapter › peer-review

16 Citations (Scopus)

Dietary sources of fiber intake and its association with socio-economic factors among flemish preschool children

Lin, Y., Bolca, S., Vandevijvere, S., de Keyzer, W., van Oyen, H., van Camp, J., de Backer, G., de Henauw, S. & Huybrechts, I., Mar 2011, In: International Journal of Molecular Sciences. 12, 3, p. 1836-1853 18 p.

Research output: Journal Publication › Article › peer-review

Open Access

6 Citations (Scopus)

FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology

Olsen, L. R., Zhang, G. L., Reinherz, E. L. & Brusic, V., 2011, In: Immunome Research. 7, 3, 2.

Research output: Journal Publication › Article › peer-review

24 Citations (Scopus)

Gepoclu: A software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis

Dottorini, T., Senin, N., Mazzoleni, G., Magnusson, K. & Crisanti, A., 26 Jan 2011, In: BMC Bioinformatics. 12, 34.

Research output: Journal Publication › Article › peer-review

Open Access

4 Citations (Scopus)

Global stability and persistence in LG-Holling type II diseased predator ecosystems

Sarwardi, S., Haque, M. & Venturino, E., Jan 2011, In: Journal of Biological Physics. 37, 1, p. 91-106 16 p.

Research output: Journal Publication › Article › peer-review

Open Access

37 Citations (Scopus)

PB1-F2 Finder: Scanning influenza sequences for PB1-F2 encoding RNA segments

DeLuca, D. S., Keskin, D. B., Zhang, G. L., Reinherz, E. L. & Brusic, V., 30 Nov 2011, In: BMC Bioinformatics. 12, SUPPL. 13, S6.

Research output: Journal Publication › Article › peer-review

Open Access

7 Citations (Scopus)

2010

A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2⁺ epithelial cancers

Riemer, A. B., Keskin, D. B., Zhang, G., Handley, M., Anderson, K. S., Brusic, V., Reinhold, B. & Reinherz, E. L., 17 Sept 2010, In: Journal of Biological Chemistry. 285, 38, p. 29608-29622 15 p.

Research output: Journal Publication › Article › peer-review

Open Access

74 Citations (Scopus)

2009

High-resolution J-coupled ¹³C MAS NMR spectroscopy of lipid membranes

Ciesielski, F., Griffin, D. C., Rittig, M. & Bonev, B. B., Oct 2009, In: Chemistry and Physics of Lipids. 161, 2, p. 77-85 9 p.

Research output: Journal Publication › Article › peer-review

14 Citations (Scopus)

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization

Pappalardo, F., Halling-Brown, M. D., Rapin, N., Zhang, P., Alemani, D., Emerson, A., Paci, P., Duroux, P., Pennisi, M., Palladini, A., Miotto, O., Churchill, D., Rossi, E., Shepherd, A. J., Moss, D. S., Castiglione, F., Bernaschi, M., Lefranc, M. P., Brunak, S. & Motta, S. & 3 others, Lollini, P. L., Basford, K. E. & Brusic, V., 2009, In: Briefings in Bioinformatics. 10, 3, p. 330-340 11 p.

Research output: Journal Publication › Article › peer-review

Open Access

37 Citations (Scopus)

Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design

Halling-Brown, M., Shaban, R., Frampton, D., Sansom, C. E., Davies, M., Flower, D., Duffield, M., Titball, R. W., Brusic, V. & Moss, D. S., Aug 2009, In: Molecular Immunology. 46, 13, p. 2699-2705 7 p.

Research output: Journal Publication › Article › peer-review

7 Citations (Scopus)

Virulotyping of Salmonella enterica subsp. enterica isolated from indigenous vegetables and poultry meat in Malaysia using multiplex-PCR

Khoo, C. H., Cheah, Y. K., Lee, L. H., Sim, J. H., Salleh, N. A., Sidik, S. M., Radu, S. & Sukardi, S., Nov 2009, In: Antonie van Leeuwenhoek. 96, 4, p. 441-457 17 p.

Research output: Journal Publication › Article › peer-review

Open Access

37 Citations (Scopus)

2008

Analysis of Salmonella Agona and Salmonella Weltevreden in Malaysia by PCR fingerprinting and antibiotic resistance profiling

Learn-Han, L., Yoke-Kqueen, C., Salleh, N. A., Sukardi, S., Jiun-Horng, S., Chai-Hoon, K. & Radu, S., 2008, In: Antonie van Leeuwenhoek. 94, 3, p. 377-387 11 p.

Research output: Journal Publication › Article › peer-review

31 Citations (Scopus)

Chromosome 9p21.3 is associated with early-onset coronary heart disease in the Irish population

Meng, W., Hughes, A. E., Patterson, C. C., Belton, C., Kee, F. & McKeown, P. P., 2008, In: Disease Markers. 25, 2, p. 81-85 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

20 Citations (Scopus)

Computational simulations of the immune system for personalized medicine: State of the art and challenges

Pappalardo, F., Zhang, P., Halling-Brown, M., Basford, K., Scalia, A., Shepherd, A., Moss, D., Motta, S. & Brusic, V., 2008, In: Current Pharmacogenomics and Personalized Medicine. 6, 4, p. 260-271 12 p.

Research output: Journal Publication › Review article › peer-review

16 Citations (Scopus)

Critical technologies for bioinformatics

Brusic, V. & Ranganathan, S., Jul 2008, In: Briefings in Bioinformatics. 9, 4, p. 261-262 2 p.

Research output: Journal Publication › Editorial

Open Access

4 Citations (Scopus)

Data mining of cancer vaccine trials: A bird's-eye view

Cao, X., Maloney, K. B. & Brusic, V., 2008, In: Immunome Research. 4, 1, 7.

Research output: Journal Publication › Article › peer-review

Open Access

11 Citations (Scopus)

Electronic current density expanded in natural orbitals

Greer, J. C., Jun 2008, In: Molecular Physics. 106, 11, p. 1363-1367 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

5 Citations (Scopus)

Evaluation of MHC-II peptide binding prediction servers: Applications for vaccine research

Lin, H. H., Zhang, G. L., Tongchusak, S., Reinherz, E. L. & Brusic, V., 12 Dec 2008, In: BMC Bioinformatics. 9, SUPPL. 12, S22.

Research output: Journal Publication › Article › peer-review

Open Access

189 Citations (Scopus)

Hotspot Hunter: A computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes

Zhang, G. L., Khan, A. M., Srinivasan, K. N., Heiny, A. T., Lee, K. X., Kwoh, C. K., August, J. T. & Brusic, V., 13 Feb 2008, In: BMC Bioinformatics. 9, SUPPL. 1, S19.

Research output: Journal Publication › Article › peer-review

Open Access

2 Citations (Scopus)

Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis

Miotto, O., Heiny, A. T., Tan, T. W., Thomas, J. T. & Brusic, V., 13 Feb 2008, In: BMC Bioinformatics. 9, SUPPL. 1, S18.

Research output: Journal Publication › Article › peer-review

Open Access

88 Citations (Scopus)

Promiscuous T cell epitope prediction of Candida albicans secretory aspartyl protienase family of proteins

Tongchusak, S., Brusic, V. & Chaiyaroj, S. C., Jul 2008, In: Infection, Genetics and Evolution. 8, 4, p. 467-473 7 p.

Research output: Journal Publication › Article › peer-review

9 Citations (Scopus)

Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses

Miotto, O., Tan, T. W. & Brusic, V., 13 Feb 2008, In: BMC Bioinformatics. 9, SUPPL. 1, S7.

Research output: Journal Publication › Article › peer-review

Open Access

11 Citations (Scopus)

2007

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

Tong, J. C., Zhang, Z. H., August, J. T., Brusic, V., Tan, T. W. & Ranganathan, S., 2007, In: Immunome Research. 3, 1, 7.

Research output: Journal Publication › Article › peer-review

Open Access

13 Citations (Scopus)

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

Rajapakse, M., Schmidt, B., Feng, L. & Brusic, V., 22 Nov 2007, In: BMC Bioinformatics. 8, 459.

Research output: Journal Publication › Article › peer-review

Open Access

30 Citations (Scopus)

Proteome informatics for cancer research: From molecules to clinic

Brusic, V., Marina, O., Wu, C. J. & Reinherz, E. L., Mar 2007, In: Proteomics. 7, 6, p. 976-991 16 p.

Research output: Journal Publication › Review article › peer-review

24 Citations (Scopus)

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