Find Research outputs

2025

Impact of water stress to plant epigenetic mechanisms in stress and adaptation

Aanniz, T., El Baaboua, A., Aboulaghras, S., Bouyahya, A., Benali, T., Balahbib, A., El Omari, N., Butnariu, M., Muzammil, K., Yadav, K. K., Al Abdulmonem, W., Lee, L. H., Zengin, G. & Chamkhi, I., 1 Jan 2025, In: Physiologia Plantarum. 177, 1, e70058.

Research output: Journal Publication › Review article › peer-review

Role of sortase-assembled Ebp pili in Enterococcus faecalis adhesion to iron oxides and its impact on extracellular electron transfer

Ho, F. K., Lam, L. N., Matysik, A., Watts, T. D., Wong, J. J., Chong, K. K. L., Choo, P. Y., Tolar, J., Low, P. M., Chua, Z. S., Paxman, J. J., Heras, B., Marsili, E., Ajo-Franklin, C. M. & Kline, K. A., Mar 2025, In: Microbiology Spectrum. 13, 3

Research output: Journal Publication › Article › peer-review

Open Access

The environmental impact of extracellular matrix preparation

Chen, Y., Ke, Z., Wang, H., Zhang, R., Zhou, Y., Marsili, E. & Mei, J., 2025, (Accepted/In press) In: FEBS Journal.

Research output: Journal Publication › Article › peer-review

2024

Advancements in Fluorescence Sensing: Carbon Quantum Dots for Acrylamide Detection in Food

Sharma, N., Thakur, S., Bains, A., Sridhar, K., Dhull, S. B., Janghu, S., Sharma, M., Patil, S. & Chawla, P., 2024, In: Journal of Food Biochemistry. 2024, 5045531.

Research output: Journal Publication › Review article › peer-review

Open Access

1 Citation (Scopus)

Development of Sustainable Vegan Pea Protein-Zinc Complex: Characterization, in Vitro Cellular Mineral Uptake, and Application in Functional Biscuit Production

Jindal, A., Patil, N. D., Bains, A., Sharma, M., Kumar, A., Ali, N., Chawla, P. & Sridhar, K., 2024, In: Journal of Food Biochemistry. 2024, 5520236.

Research output: Journal Publication › Article › peer-review

Open Access

1 Citation (Scopus)

Effect of Sustainable Pretreatments on the Nutritional and Functionality of Chickpea Protein: Implication for Innovative Food Product Development

Patil, N. D., Bains, A., Sridhar, K., Rashid, S., Kaur, S., Ali, N., Chawla, P. & Sharma, M., 2024, In: Journal of Food Biochemistry. 2024, 5173736.

Research output: Journal Publication › Review article › peer-review

Open Access

8 Citations (Scopus)

Lens capsule advanced glycation end products induce senescence in epithelial cells: Implications for secondary cataracts

Cooksley, G., Nam, M. H., Nahomi, R. B., Rankenberg, J., Smith, A. J. O., Wormstone, Y. M., Wormstone, I. M. & Nagaraj, R. H., Oct 2024, In: Aging Cell. 23, 10, e14249.

Research output: Journal Publication › Article › peer-review

Open Access

3 Citations (Scopus)

2023

A Meta-Analysis of the Genome-Wide Association Studies on Two Genetically Correlated Phenotypes Suggests Four New Risk Loci for Headaches

23andMe Research Team, Feb 2023, In: Phenomics. 3, 1, p. 64-76 13 p.

Research output: Journal Publication › Article › peer-review

Open Access

4 Citations (Scopus)

Enhancing Zinc Uptake through Dual-Modification of Cicer arietinum Protein

Patil, N. D., Bains, A., Sridhar, K., Kaur, S., Ali, N., Alasmari, A. F., Patil, S., Chawla, P. & Sharma, M., 2023, In: Journal of Food Biochemistry. 2023, 6643960.

Research output: Journal Publication › Article › peer-review

Open Access

13 Citations (Scopus)

2022

Health Benefits and Pharmacological Properties of Stigmasterol

Bakrim, S., Benkhaira, N., Bourais, I., Benali, T., Lee, L. H., El Omari, N., Sheikh, R. A., Goh, K. W., Ming, L. C. & Bouyahya, A., Oct 2022, In: Antioxidants. 11, 10, 1912.

Research output: Journal Publication › Review article › peer-review

Open Access

188 Citations (Scopus)

The Current State of Knowledge in Biological Properties of Cirsimaritin

Benali, T., Jaouadi, I., Ghchime, R., El Omari, N., Harboul, K., Hammani, K., Rebezov, M., Shariati, M. A., Mubarak, M. S., Simal-Gandara, J., Zengin, G., Park, M. N., Kim, B., Mahmud, S., Lee, L. H. & Bouyahya, A., Sept 2022, In: Antioxidants. 11, 9, 1842.

Research output: Journal Publication › Review article › peer-review

Open Access

19 Citations (Scopus)

2021

Cellular FLICE-like inhibitory protein (cFLIP) critically maintains apoptotic resistance in human lens epithelial cells

Huangfu, J., Hao, C., Wei, Z., Wormstone, I. M., Yan, H. & Fan, X., Apr 2021, In: Cell Death and Disease. 12, 4, 386.

Research output: Journal Publication › Article › peer-review

Open Access

6 Citations (Scopus)

Transcriptomic Analysis of Cardiomyocyte Extracellular Vesicles in Hypertrophic Cardiomyopathy Reveals Differential snoRNA Cargo

James, V., Nizamudeen, Z. A., Lea, D., Dottorini, T., Holmes, T. L., Johnson, B. B., Arkill, K. P., Denning, C. & Smith, J. G. W., 15 Dec 2021, In: Stem Cells and Development. 30, 24, p. 1215-1227 13 p.

Research output: Journal Publication › Article › peer-review

Open Access

22 Citations (Scopus)

2020

Aspirin inhibits TGFβ2-induced epithelial to mesenchymal transition of lens epithelial cells: Selective acetylation of K56 and K122 in histone H3

Nam, M. H., Smith, A. J. O., Pantcheva, M. B., Park, K. U., Brzezinski Iv, J. A., Galligan, J. J., Fritz, K., Wormstone, I. M. & Nagaraj, R. H., 8 Jan 2020, In: Biochemical Journal. 477, 1, p. 75-97 23 p.

Research output: Journal Publication › Article › peer-review

Open Access

15 Citations (Scopus)

Bile and urine peptide marker profiles: Access keys to molecular pathways and biological processes in cholangiocarcinoma

Voigtländer, T., Metzger, J., Husi, H., Kirstein, M. M., Pejchinovski, M., Latosinska, A., Frantzi, M., Mullen, W., Book, T., Mischak, H. & Manns, M. P., 3 Jan 2020, In: Journal of Biomedical Science. 27, 1, 13.

Research output: Journal Publication › Article › peer-review

Open Access

26 Citations (Scopus)

Coronavirus disease 19 with gastrointestinal symptoms as initial manifestations: a case report

Wu, C. Y., Yu, X. P., Ma, A. H. Y., Wang, L. P., Yang, N. B., Li, G. X., Shi, J. J. & Qian, G. Q., Sept 2020, In: Journal of International Medical Research. 48, 9

Research output: Journal Publication › Article › peer-review

Open Access

File

9 Citations (Scopus)

51 Downloads (Pure)

Detrimental Effects of UVB on Retinal Pigment Epithelial Cells and Its Role in Age-Related Macular Degeneration

Mahendra, C. K., Tan, L. T. H., Pusparajah, P., Htar, T. T., Chuah, L. H., Lee, V. S., Low, L. E., Tang, S. Y., Chan, K. G. & Goh, B. H., 2020, In: Oxidative Medicine and Cellular Longevity. 2020, 1904178.

Research output: Journal Publication › Review article › peer-review

Open Access

36 Citations (Scopus)

Effect of (R)-salbutamol on the switch of phenotype and metabolic pattern in LPS-induced macrophage cells

Wang, S., Liu, F., Tan, K. S., Ser, H. L., Tan, L. T. H., Lee, L. H. & Tan, W., 1 Jan 2020, In: Journal of Cellular and Molecular Medicine. 24, 1, p. 722-736 15 p.

Research output: Journal Publication › Article › peer-review

Open Access

28 Citations (Scopus)

Immunological techniques to assess protein thiol redox state: Opportunities, challenges and solutions

Cobley, J. N. & Husi, H., Apr 2020, In: Antioxidants. 9, 4, 315.

Research output: Journal Publication › Review article › peer-review

Open Access

23 Citations (Scopus)

Modified QuEChERS extraction method followed by simultaneous quantitation of nine multi-class pesticides in human blood and urine by using GC-MS

Iqbal, S., Iqbal, M. M., Javed, M., Bahadur, A., Yasien, S., Najam-ud-din, Hurr, A., Ahmad, N., Raheel, M. & Liu, G., 1 Sept 2020, In: Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences. 1152, 122227.

Research output: Journal Publication › Article › peer-review

52 Citations (Scopus)

Reversible thiol oxidation inhibits the mitochondrial ATP synthase in Xenopus Laevis Oocytes

Cobley, J., Noble, A., Bessell, R., Guille, M. & Husi, H., Mar 2020, In: Antioxidants. 9, 3, 215.

Research output: Journal Publication › Article › peer-review

Open Access

13 Citations (Scopus)

2018

Extracellular matrix cross-linking enhances fibroblast growth and protects against matrix proteolysis in lung fibrosis

Philp, C. J., Siebeke, I., Clements, D., Miller, S., Habgood, A., John, A. E., Navaratnam, V., Hubbard, R. B., Jenkins, G. & Johnson, S. R., 1 May 2018, In: American Journal of Respiratory Cell and Molecular Biology. 58, 5, p. 594-603 10 p.

Research output: Journal Publication › Article › peer-review

Open Access

116 Citations (Scopus)

2017

An objective comparison of cell-tracking algorithms

Ulman, V., Maška, M., Magnusson, K. E. G., Ronneberger, O., Haubold, C., Harder, N., Matula, P., Matula, P., Svoboda, D., Radojevic, M., Smal, I., Rohr, K., Jaldén, J., Blau, H. M., Dzyubachyk, O., Lelieveldt, B., Xiao, P., Li, Y., Cho, S. Y. & Dufour, A. C. & 19 others, Olivo-Marin, J. C., Reyes-Aldasoro, C. C., Solis-Lemus, J. A., Bensch, R., Brox, T., Stegmaier, J., Mikut, R., Wolf, S., Hamprecht, F. A., Esteves, T., Quelhas, P., Demirel, Ö., Malmström, L., Jug, F., Tomancak, P., Meijering, E., Muñoz-Barrutia, A., Kozubek, M. & Ortiz-De-Solorzano, C., 1 Dec 2017, In: Nature Methods. 14, 12, p. 1141-1152 12 p.

Research output: Journal Publication › Article › peer-review

Open Access

File

400 Citations (Scopus)

56 Downloads (Pure)

2016

AGEs in human lens capsule promote the TGFβ2-mediated EMT of lens epithelial cells: Implications for age-associated fibrosis

Raghavan, C. T., Smuda, M., Smith, A. J. O., Howell, S., Smith, D. G., Singh, A., Gupta, P., Glomb, M. A., Wormstone, I. M. & Nagaraj, R. H., 1 Jun 2016, In: Aging Cell. 15, 3, p. 465-476 12 p.

Research output: Journal Publication › Article › peer-review

Open Access

66 Citations (Scopus)

Exploring morphological generality in the Old World monkey postcranium using an ecomorphological framework

Elton, S., Jansson, A. U., Meloro, C., Louys, J., Plummer, T. & Bishop, L. C., 1 Apr 2016, In: Journal of Anatomy. 228, 4, p. 534-560 27 p.

Research output: Journal Publication › Article › peer-review

Open Access

25 Citations (Scopus)

Recognition of membrane sterols by polyene antifungals amphotericin B and natamycin, A ¹³ C MAS NMR study

Ciesielski, F., Griffin, D. C., Loraine, J., Rittig, M., Delves-Broughton, J. & Bonev, B. B., 17 Jun 2016, In: Frontiers in Cell and Developmental Biology. 4, JUN, 57.

Research output: Journal Publication › Article › peer-review

Open Access

18 Citations (Scopus)

2015

Functional amyloids keep quorum-sensing molecules in check

Seviour, T., Hansen, S. H., Yang, L., Yau, Y. H., Wang, V. B., Stenvang, M. R., Christiansen, G., Marsili, E., Givskov, M., Chen, Y., Otzen, D. E., Nielsen, P. H., Geifman-Shochat, S., Kjelleberg, S. & Dueholm, M. S., 6 Mar 2015, In: Journal of Biological Chemistry. 290, 10, p. 6457-6469 13 p.

Research output: Journal Publication › Article › peer-review

Open Access

73 Citations (Scopus)

2014

Capillary electrophoresis interfaced with a mass spectrometer (CE-MS): Technical considerations and applicability for biomarker studies in animals

Albalat, A., Husi, H., Siwy, J., Nally, J. E., McLauglin, M., Eckersall, P. D. & Mullen, W., Jan 2014, In: Current Protein and Peptide Science. 15, 1, p. 23-35 13 p.

Research output: Journal Publication › Review article › peer-review

13 Citations (Scopus)

Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia

Rajasagi, M., Shukla, S. A., Fritsch, E. F., Keskin, D. B., DeLuca, D., Carmona, E., Zhang, W., Sougnez, C., Cibulskis, K., Sidney, J., Stevenson, K., Ritz, J., Neuberg, D., Brusic, V., Gabriel, S., Lander, E. S., Getz, G., Hacohen, N. & Wu, C. J., 17 Jul 2014, In: Blood. 124, 3, p. 453-462 10 p.

Research output: Journal Publication › Article › peer-review

Open Access

258 Citations (Scopus)

2013

A low-molecular-weight ferroxidase is increased in the CSF of sCJD cases: CSF ferroxidase and transferrin as diagnostic biomarkers for sCJD

Haldar, S., Beveridge, '. J., Wong, J., Singh, A., Galimberti, D., Borroni, B., Zhu, X., Blevins, J., Greenlee, J., Perry, G., Mukhopadhyay, C. K., Schmotzer, C. & Singh, N., 2013, In: Antioxidants and Redox Signaling. 19, 14, p. 1662-1675 14 p.

Research output: Journal Publication › Article › peer-review

Open Access

18 Citations (Scopus)

Interactions of lipopolysaccharide with lipid membranes, raft models - A solid state NMR study

Ciesielski, F., Griffin, D. C., Rittig, M., Moriyón, I. & Bonev, B. B., 2013, In: Biochimica et Biophysica Acta - Biomembranes. 1828, 8, p. 1731-1742 12 p.

Research output: Journal Publication › Article › peer-review

Open Access

19 Citations (Scopus)

2012

Novel myeloma-associated antigens revealed in the context of syngeneic hematopoietic stem cell transplantation

Biernacki, M. A., Tai, Y. T., Zhang, G. L., Alonso, A., Zhang, W., Prabhala, R., Zhang, L., Munshi, N., Neuberg, D., Soiffer, R. J., Ritz, J., Alyea, E. P., Brusic, V., Anderson, K. C. & Wu, C. J., 29 Mar 2012, In: Blood. 119, 13, p. 3142-3150 9 p.

Research output: Journal Publication › Article › peer-review

Open Access

10 Citations (Scopus)

2011

Global stability and persistence in LG-Holling type II diseased predator ecosystems

Sarwardi, S., Haque, M. & Venturino, E., Jan 2011, In: Journal of Biological Physics. 37, 1, p. 91-106 16 p.

Research output: Journal Publication › Article › peer-review

Open Access

37 Citations (Scopus)

2010

A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2⁺ epithelial cancers

Riemer, A. B., Keskin, D. B., Zhang, G., Handley, M., Anderson, K. S., Brusic, V., Reinhold, B. & Reinherz, E. L., 17 Sept 2010, In: Journal of Biological Chemistry. 285, 38, p. 29608-29622 15 p.

Research output: Journal Publication › Article › peer-review

Open Access

75 Citations (Scopus)

2009

A fully flexible stimulator using 65 nm CMOS process for 1024-electrode epi-retinal prosthesis

Tran, N., Yang, J., Bai, S., Ng, D., Halpern, M., Grayden, D. B., Skafidas, E. & Mareels, I., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 1643-1646 4 p. 5334239. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

10 Citations (Scopus)

An automatic diagnosis system of nuclear cataract using slit-lamp images

Li, H., Lim, J. H., Liu, J., Wong, D. W. K., Tan, N. M., Lu, S., Zhang, Z. & Wong, T. Y., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3693-3696 4 p. 5334735. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

35 Citations (Scopus)

Automatic detection of pathological myopia using variational level set

Tan, N. M., Liu, J., Wong, D. W. K., Lim, J. H., Zhang, Z., Lu, S., Li, H., Saw, S. M., Tong, L. & Wong, T. Y., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 3609-3612 4 p. 5333517. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

28 Citations (Scopus)

Automatic fundus image classification for computer-aided diagonsis

Lu, S., Liu, J., Lim, J. H., Zhang, Z., Meng, T. N., Wong, W. K., Li, H. & Wong, T. Y., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 1453-1456 4 p. 5332917. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

5 Citations (Scopus)

Convex hull based neuro-retinal optic cup ellipse optimization in glaucoma diagnosis

Zhang, Z., Liu, J., Cherian, N. S., Sun, Y., Lim, J. H., Wong, W. K., Tan, N. M., Lu, S., Li, H. & Wong, T. Y., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 1441-1444 4 p. 5332913. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

40 Citations (Scopus)

High-resolution J-coupled ¹³C MAS NMR spectroscopy of lipid membranes

Ciesielski, F., Griffin, D. C., Rittig, M. & Bonev, B. B., Oct 2009, In: Chemistry and Physics of Lipids. 161, 2, p. 77-85 9 p.

Research output: Journal Publication › Article › peer-review

14 Citations (Scopus)

Intelligent fusion of cup-to-disc ratio determination methods for glaucoma detection in ARGALI

Wong, D. W. K., Liu, J., Lim, J. H., Tan, N. M., Zhang, Z., Lu, S., Li, H., Teo, M. H., Chan, K. L. & Wong, T. Y., 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 5777-5780 4 p. 5332534. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

51 Citations (Scopus)

2005

Proteomic analysis of in vivo phosphorylated synaptic proteins

Collins, M. O., Yu, L., Coba, M. P., Husi, H., Campuzano, I., Blackstock, W. P., Choudhary, J. S. & Grant, S. G. N., 18 Feb 2005, In: Journal of Biological Chemistry. 280, 7, p. 5972-5982 11 p.

Research output: Journal Publication › Article › peer-review

Open Access

292 Citations (Scopus)

2003

Identification of PSD-93 as a Substrate for the Src Family Tyrosine Kinase Fyn

Nada, S., Shima, T., Yanai, H., Husi, H., Grant, S. G. N., Okada, M. & Akiyama, T., 28 Nov 2003, In: Journal of Biological Chemistry. 278, 48, p. 47610-47621 12 p.

Research output: Journal Publication › Article › peer-review

Open Access

48 Citations (Scopus)

2002

Computational immunology: The coming of age

Petrovsky, N. & Brusic, V., 2002, In: Immunology and Cell Biology. 80, 3, p. 248-254 7 p.

Research output: Journal Publication › Review article › peer-review

51 Citations (Scopus)

Large-scale computational identification of HIV T-cell epitopes

Schönbach, C., Kun, Y. & Brusic, V., 2002, In: Immunology and Cell Biology. 80, 3, p. 300-306 7 p.

Research output: Journal Publication › Review article › peer-review

19 Citations (Scopus)

Prediction of promiscuous peptides that bind HLA class I molecules

Brusic, V., Petrovsky, N., Zhang, G. & Bajic, V. B., 2002, In: Immunology and Cell Biology. 80, 3, p. 280-285 6 p.

Research output: Journal Publication › Review article › peer-review

88 Citations (Scopus)

1999

Biochemical and structural characterization of a divergent loop cyclophilin from Caenorhabditis elegans

Dornan, J., Page, A. P., Taylor, P., Wu, S. Y., Winter, A. D., Husi, H. & Walkinshaw, M. D., 3 Dec 1999, In: Journal of Biological Chemistry. 274, 49, p. 34877-34883 7 p.

Research output: Journal Publication › Article › peer-review

Open Access

43 Citations (Scopus)

1998

The X-ray structure of a divergent cyclophilin from the nematode parasite Brugia malayi

Taylor, P., Page, A. P., Kontopidis, G., Husi, H. & Walkinshaw, M. D., 27 Mar 1998, In: FEBS Letters. 425, 2, p. 361-366 6 p.

Research output: Journal Publication › Article › peer-review

26 Citations (Scopus)

1997

Prediction of substrate-specific pockets in cyclosporin synthetase

Husi, H., Schörgendorfer, K., Stempfer, G., Taylor, P. & Walkinshaw, M. D., 15 Sept 1997, In: FEBS Letters. 414, 3, p. 532-536 5 p.

Research output: Journal Publication › Article › peer-review

Open Access

12 Citations (Scopus)

1994

Comparative Binding Studies of Cyclophilins to Cyclosporine A and Derivatives by Fluorescence Measurements

Husi, H. & Zurini, M. G. M., Oct 1994, In: Analytical Biochemistry. 222, 1, p. 251-255 5 p.

Research output: Journal Publication › Article › peer-review

31 Citations (Scopus)

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