Find Research outputs

2011

PB1-F2 Finder: Scanning influenza sequences for PB1-F2 encoding RNA segments

DeLuca, D. S., Keskin, D. B., Zhang, G. L., Reinherz, E. L. & Brusic, V., 30 Nov 2011, In: BMC Bioinformatics. 12, SUPPL. 13, S6.

Research output: Journal Publication › Article › peer-review

Open Access

7 Citations (Scopus)

2010

A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2⁺ epithelial cancers

Riemer, A. B., Keskin, D. B., Zhang, G., Handley, M., Anderson, K. S., Brusic, V., Reinhold, B. & Reinherz, E. L., 17 Sept 2010, In: Journal of Biological Chemistry. 285, 38, p. 29608-29622 15 p.

Research output: Journal Publication › Article › peer-review

Open Access

74 Citations (Scopus)

Selective chemical intervention in the proteome of caenorhabditis elegans

Husi, H., McAllister, F., Angelopoulos, N., Butler, V. J., Bailey, K. R., Malone, K., MacKay, L., Taylor, P., Page, A. P., Turner, N. J., Barran, P. E. & Walkinshaw, M., 5 Nov 2010, In: Journal of Proteome Research. 9, 11, p. 6060-6070 11 p.

Research output: Journal Publication › Article › peer-review

1 Citation (Scopus)

Total synthesis of (+)-Z-deoxypukalide, a furanobutenolide-based cembranoid isolated from the pacific octocoral Leptogorgia spp.

Tang, B., Bray, C. D., Pattenden, G. & Rogers, J., 27 Mar 2010, In: Tetrahedron. 66, 13, p. 2492-2500 9 p.

Research output: Journal Publication › Article › peer-review

34 Citations (Scopus)

2009

A Combined theoretical and experimental study on the role of spin states in the chemistry of fe(co)₅ photoproducts

Besora, M., Carreón-Macedo, J. L., Cowan, A. J., George, M. W., Harvey, J. N., Portius, P., Ronayne, K. L., Sun, X. Z. & Towrie, M., 18 Mar 2009, In: Journal of the American Chemical Society. 131, 10, p. 3583-3592 10 p.

Research output: Journal Publication › Article › peer-review

117 Citations (Scopus)

Determination of atmospheric polycyclic aromatic hydrocarbons using accelerated solvent extraction

He, J. & Balasubramanian, R., 2009, In: Analytical Letters. 42, 11, p. 1603-1619 17 p.

Research output: Journal Publication › Article › peer-review

19 Citations (Scopus)

Determination of total nitrogen in environmental samples: Validation by comparison of techniques and intralaboratory studies

Karthikeyan, S., He, J., Joshi, U. M. & Balasubramanian, R., Jan 2009, In: Analytical Letters. 42, 7, p. 948-957 10 p.

Research output: Journal Publication › Article › peer-review

High-resolution J-coupled ¹³C MAS NMR spectroscopy of lipid membranes

Ciesielski, F., Griffin, D. C., Rittig, M. & Bonev, B. B., Oct 2009, In: Chemistry and Physics of Lipids. 161, 2, p. 77-85 9 p.

Research output: Journal Publication › Article › peer-review

14 Citations (Scopus)

Impact of carbon to nitrogen ratio on nutrient removal in a liquid-solid circulating fluidized bed bioreactor (LSCFB)

Islam, M., George, N., Zhu, J. & Chowdhury, N., May 2009, In: Process Biochemistry. 44, 5, p. 578-583 6 p.

Research output: Journal Publication › Article › peer-review

25 Citations (Scopus)

Ps-TRIR covers all the bases - Recent advances in the use of transient IR for the detection of short-lived species in nucleic acids

Towrie, M., Doorley, G. W., George, M. W., Parker, A. W., Quinn, S. J. & Kelly, J. M., 2009, In: Analyst. 134, 7, p. 1265-1273 9 p.

Research output: Journal Publication › Review article › peer-review

58 Citations (Scopus)

Rheological properties of starches with different amylose/amylopectin ratios

Xie, F., Yu, L., Su, B., Liu, P., Wang, J., Liu, H. & Chen, L., May 2009, In: Journal of Cereal Science. 49, 3, p. 371-377 7 p.

Research output: Journal Publication › Article › peer-review

241 Citations (Scopus)

Total synthesis of (+)-intricarene using a biogenetically patterned pathway from (-)-bipinnatin J, involving a novel transannular [5+2] (1,3-dipolar) cycloaddition

Tang, B., Bray, C. D. & Pattenden, G., 2009, In: Organic and Biomolecular Chemistry. 7, 21, p. 4448-4457 10 p.

Research output: Journal Publication › Article › peer-review

51 Citations (Scopus)

2008

A Concentration-Dependent Analysis Method for High Density Protein Microarrays

Marina, O., Biernacki, M. A., Brusic, V. & Wu, C. J., May 2008, In: Journal of Proteome Research. 7, 5, p. 2059-2068 10 p.

Research output: Journal Publication › Article › peer-review

19 Citations (Scopus)

Evaluation of MHC-II peptide binding prediction servers: Applications for vaccine research

Lin, H. H., Zhang, G. L., Tongchusak, S., Reinherz, E. L. & Brusic, V., 12 Dec 2008, In: BMC Bioinformatics. 9, SUPPL. 12, S22.

Research output: Journal Publication › Article › peer-review

Open Access

189 Citations (Scopus)

Hotspot Hunter: A computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes

Zhang, G. L., Khan, A. M., Srinivasan, K. N., Heiny, A. T., Lee, K. X., Kwoh, C. K., August, J. T. & Brusic, V., 13 Feb 2008, In: BMC Bioinformatics. 9, SUPPL. 1, S19.

Research output: Journal Publication › Article › peer-review

Open Access

2 Citations (Scopus)

Hyperpolarized ⁸³Kr MRI of lungs

Cleveland, Z. I., Pavlovskaya, G. E., Elkins, N. D., Stupic, K. F., Repine, J. E. & Meersmann, T., Dec 2008, In: Journal of Magnetic Resonance. 195, 2, p. 232-237 6 p.

Research output: Journal Publication › Article › peer-review

24 Citations (Scopus)

Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis

Miotto, O., Heiny, A. T., Tan, T. W., Thomas, J. T. & Brusic, V., 13 Feb 2008, In: BMC Bioinformatics. 9, SUPPL. 1, S18.

Research output: Journal Publication › Article › peer-review

Open Access

88 Citations (Scopus)

Mechanism of Chrome-free Tanning with Tetra-hydroxymethyl Phosphonium Chloride^* * Supported by the National Basic Research Program (2007CB616909), Startup Foundation of Applied Chemistry of the Key Discipline of Zhejiang University of Technology and Zhejiang Provincial Science and Technology Plan (2006C21107).

SHAO, S., SHI, K., LI, Y., JIANG, L. & MA, C., Jun 2008, In: Chinese Journal of Chemical Engineering. 16, 3, p. 446-450 5 p.

Research output: Journal Publication › Article › peer-review

25 Citations (Scopus)

Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses

Miotto, O., Tan, T. W. & Brusic, V., 13 Feb 2008, In: BMC Bioinformatics. 9, SUPPL. 1, S7.

Research output: Journal Publication › Article › peer-review

Open Access

11 Citations (Scopus)

2007

An improved process for preparing activated carbon with large specific surface area from corncob

Sun, Y., Zhang, J. P., Yang, G. & Li, Z. H., 2007, In: Chemical and Biochemical Engineering Quarterly. 21, 2, p. 169-174 6 p.

Research output: Journal Publication › Article › peer-review

30 Citations (Scopus)

Hyperpolarized ⁸³Kr and ¹²⁹Xe NMR relaxation measurements of hydrated surfaces: Implications for materials science and pulmonary diagnostics

Cleveland, Z. I., Stupic, K. F., Pavlovskaya, G. E., Repine, J. E., Wooten, J. B. & Meersmann, T., 14 Feb 2007, In: Journal of the American Chemical Society. 129, 6, p. 1784-1792 9 p.

Research output: Journal Publication › Article › peer-review

27 Citations (Scopus)

Influence of membrane material and corrugation and process conditions on emulsion microfiltration

Hu, B. & Scott, K., 15 May 2007, In: Journal of Membrane Science. 294, 1-2, p. 30-39 10 p.

Research output: Journal Publication › Article › peer-review

52 Citations (Scopus)

Operating characteristics of solid-state fermentation bioreactor with air pressure pulsation

Liu, J., Li, D. B. & Yang, J. C., Apr 2007, In: Applied Biochemistry and Microbiology. 43, 2, p. 211-216 6 p.

Research output: Journal Publication › Article › peer-review

9 Citations (Scopus)

Photophysical and structural properties of cyanoruthenate complexes of hexaazatriphenylene

Herrera, J. M., Pope, S. J. A., Meijer, A. J. H. M., Easun, T. L., Adams, H., Alsindi, W. Z., Sun, X. Z., George, M. W., Faulkner, S. & Ward, M. D., 19 Sept 2007, In: Journal of the American Chemical Society. 129, 37, p. 11491-11504 14 p.

Research output: Journal Publication › Article › peer-review

64 Citations (Scopus)

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

Rajapakse, M., Schmidt, B., Feng, L. & Brusic, V., 22 Nov 2007, In: BMC Bioinformatics. 8, 459.

Research output: Journal Publication › Article › peer-review

Open Access

30 Citations (Scopus)

Proteome informatics for cancer research: From molecules to clinic

Brusic, V., Marina, O., Wu, C. J. & Reinherz, E. L., Mar 2007, In: Proteomics. 7, 6, p. 976-991 16 p.

Research output: Journal Publication › Review article › peer-review

24 Citations (Scopus)

Structural and photophysical properties of adducts of [Ru(bipy)(CN) ₄]^2- with different metal cations: Metallochromism and its use in switching photoinduced energy transfer

Lazarides, T., Easun, T. L., Veyne-Martí, C., Alsindi, W. Z., George, M. W., Deppermann, N., Hunter, C. A., Adams, H. & Ward, M. D., 4 Apr 2007, In: Journal of the American Chemical Society. 129, 13, p. 4014-4027 14 p.

Research output: Journal Publication › Article › peer-review

63 Citations (Scopus)

2006

A biomimetic total synthesis of (+)-intricarene

Tang, B., Bray, C. D. & Pattenden, G., 4 Sept 2006, In: Tetrahedron Letters. 47, 36, p. 6401-6404 4 p.

Research output: Journal Publication › Article › peer-review

88 Citations (Scopus)

A porous framework polymer based on a zinc(II) 4,4′-bipyridine-2,6, 2′,6′-tetracarboxylate: Synthesis, structure, and "zeolite-like" behaviors

Lin, X., Blake, A. J., Wilson, C., Sun, X. Z., Champness, N. R., George, M. W., Hubberstey, P., Mokaya, R. & Schröder, M., 23 Aug 2006, In: Journal of the American Chemical Society. 128, 33, p. 10745-10753 9 p.

Research output: Journal Publication › Article › peer-review

306 Citations (Scopus)

Deduction of functional peptide motifs in scorpion toxins

Tan, P. T. J., Ranganathan, S. & Brusic, V., Jun 2006, In: Journal of Peptide Science. 12, 6, p. 420-427 8 p.

Research output: Journal Publication › Article › peer-review

11 Citations (Scopus)

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus

Khan, A. M., Heiny, A. T., Lee, K. X., Srinivasan, K. N., Tan, T. W., August, J. T. & Brusic, V., 18 Dec 2006, In: BMC Bioinformatics. 7, SUPPL.5, S4.

Research output: Journal Publication › Article › peer-review

Open Access

36 Citations (Scopus)

Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome.

Collins, M. O., Husi, H., Yu, L., Brandon, J. M., Anderson, C. N. G., Blackstock, W. P., Choudhary, J. S. & Grant, S. G. N., Apr 2006, In: Journal of Neurochemistry. 97 Suppl 1, p. 16-23 8 p.

Research output: Journal Publication › Article › peer-review

Open Access

362 Citations (Scopus)

Prediction of HLA-DQ3.2β ligands: Evidence of multiple registers in class II binding peptides

Tong, J. C., Zhang, G. L., Tan, T. W., August, J. T., Brusic, V. & Ranganathan, S., 15 May 2006, In: Bioinformatics. 22, 10, p. 1232-1238 7 p.

Research output: Journal Publication › Article › peer-review

Open Access

42 Citations (Scopus)

Removal of pollutants with activated carbon produced from K ₂CO₃ activation of lignin from reed black liquors

Sun, Y., Zhang, J. P., Yang, G. & Li, Z. H., 2006, In: Chemical and Biochemical Engineering Quarterly. 20, 4, p. 429-435 7 p.

Research output: Journal Publication › Article › peer-review

39 Citations (Scopus)

The JAK3 inhibitor WHI-P154 prevents PDGF-evoked process outgrowth in human neural precursor cells

Richards, G. R., Smith, A. J., Cuddon, P., Ma, Q. P., Leveridge, M., Kerby, J., Roderick, H. L., Bootman, M. D. & Simpson, P. B., Apr 2006, In: Journal of Neurochemistry. 97, 1, p. 201-210 10 p.

Research output: Journal Publication › Article › peer-review

Open Access

7 Citations (Scopus)

2005

CandiVF - Candida albicans virulence factor database

Tongchusak, S., Chaiyaroj, S. C., Veeramani, A., Koh, J. L. Y. & Brusic, V., Dec 2005, In: International Journal of Peptide Research and Therapeutics. 11, 4, p. 271-277 7 p.

Research output: Journal Publication › Article › peer-review

8 Citations (Scopus)

Introducing krypton NMR spectroscopy as a probe of void space in solids

Horton-Garcia, C. F., Pavlovskaya, G. E. & Meersmann, T., 16 Feb 2005, In: Journal of the American Chemical Society. 127, 6, p. 1958-1962 5 p.

Research output: Journal Publication › Article › peer-review

18 Citations (Scopus)

Neural models for predicting viral vaccine targets

Zhang, G. L., Khan, A. M., Srinivasan, K. N., August, J. T. & Brusic, V., Oct 2005, In: Journal of Bioinformatics and Computational Biology. 3, 5, p. 1207-1225 19 p.

Research output: Journal Publication › Article › peer-review

29 Citations (Scopus)

Proteomic analysis of in vivo phosphorylated synaptic proteins

Collins, M. O., Yu, L., Coba, M. P., Husi, H., Campuzano, I., Blackstock, W. P., Choudhary, J. S. & Grant, S. G. N., 18 Feb 2005, In: Journal of Biological Chemistry. 280, 7, p. 5972-5982 11 p.

Research output: Journal Publication › Article › peer-review

Open Access

292 Citations (Scopus)

2004

Crystal Structure of a Human VH: Requirements for Maintaining a Monomeric Fragment

Dottorini, T., Vaughan, C. K., Walsh, M. A., LoSurdo, P. & Sollazzo, M., 27 Jan 2004, In: Biochemistry. 43, 3, p. 622-628 7 p.

Research output: Journal Publication › Article › peer-review

20 Citations (Scopus)

Prediction of class I T-cell epitopes: Evidence of presence of immunological hot spots inside antigens

Srinivasan, K. N., Zhang, G. L., Khan, A. M., August, J. T. & Brusic, V., 2004, In: Bioinformatics. 20, SUPPL. 1, p. i297-i302

Research output: Journal Publication › Article › peer-review

Open Access

35 Citations (Scopus)

Systematic analysis snake neurotoxins' functional classification using a data warehousing approach

Siew, J. P. Y., Khan, A. M., Tan, P. T. J., Koh, J. L. Y., Seah, S. H., Koo, C. Y., Chai, S. C., Armugam, A., Brusic, V. & Jeyaseelan, K., 12 Dec 2004, In: Bioinformatics. 20, 18, p. 3466-3480 15 p.

Research output: Journal Publication › Article › peer-review

Open Access

13 Citations (Scopus)

Unraveling the photochemistry of Fe(CO)₅ in solution: Observation of Fe(CO)₃ and the conversion between ³Fe(CO)₄ and ¹Fe(CO)₄(solvent)

Portius, P., Yang, J., Sun, X. Z., Grills, D. C., Matousek, P., Parker, A. W., Towrie, M. & George, M. W., 1 Sept 2004, In: Journal of the American Chemical Society. 126, 34, p. 10713-10720 8 p.

Research output: Journal Publication › Article › peer-review

64 Citations (Scopus)

2003

A rapid and sensitive fluorometric flow injection assay for subtilisin-type enzymes utilising sol-gel particles directly coated with gelatin-Texas Red substrate

Theaker, B. J. & Rowell, F. J., 1 Aug 2003, In: Analyst. 128, 8, p. 1043-1047 5 p.

Research output: Journal Publication › Article › peer-review

1 Citation (Scopus)

Bonding of atomic phosphorus to polycyclic hydrocarbons and curved graphitic surfaces

Melchor, S., Dobado, J. A., Larsson, J. A. & Greer, J. C., 26 Feb 2003, In: Journal of the American Chemical Society. 125, 8, p. 2301-2306 6 p.

Research output: Journal Publication › Article › peer-review

9 Citations (Scopus)

Computational Detection of Vertebrate RNA Polymerase II Promoters

Bajic, V. B. & Brusic, V., 2003, In: Methods in Enzymology. 370, p. 237-250 14 p.

Research output: Journal Publication › Article › peer-review

8 Citations (Scopus)

From immunoinformatics to immunomics.

Brusic, V., Apr 2003, In: Journal of Bioinformatics and Computational Biology. 1, 1, p. 179-181 3 p.

Research output: Journal Publication › Article › peer-review

11 Citations (Scopus)

Identification of PSD-93 as a Substrate for the Src Family Tyrosine Kinase Fyn

Nada, S., Shima, T., Yanai, H., Husi, H., Grant, S. G. N., Okada, M. & Akiyama, T., 28 Nov 2003, In: Journal of Biological Chemistry. 278, 48, p. 47610-47621 12 p.

Research output: Journal Publication › Article › peer-review

Open Access

48 Citations (Scopus)

In Situ NMR Spectroscopy of Combustion

Anala, S., Pavlovskaya, G. E., Pichumani, P., Dieken, T. J., Olsen, M. D. & Meersmann, T., 29 Oct 2003, In: Journal of the American Chemical Society. 125, 43, p. 13298-13302 5 p.

Research output: Journal Publication › Article › peer-review

37 Citations (Scopus)

Stress-induced ATP release from and growth modulation of human lens and retinal pigment epithelial cells

Eldred, J. A., Sanderson, J., Wormstone, M., Reddan, J. R. & Duncan, G., Dec 2003, In: Biochemical Society Transactions. 31, 6, p. 1213-1215 3 p.

Research output: Journal Publication › Article › peer-review

36 Citations (Scopus)

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