Dragon promoter finder: Recognition of vertebrate RNA polymerase II promoters

Vladimir B. Bajic; Seng Hong Seah; Allen Chong; Guanglan Zhang; Judice L.Y. Koh; Vladimir Brusic

doi:10.1093/bioinformatics/18.1.198

Dragon promoter finder: Recognition of vertebrate RNA polymerase II promoters

Vladimir B. Bajic, Seng Hong Seah, Allen Chong, Guanglan Zhang, Judice L.Y. Koh, Vladimir Brusic

Research output: Journal Publication › Article › peer-review

81 Citations (Scopus)

Abstract

Dragon Promoter Finder (DPF) locates RNA polymerase II promoters in DNA sequences of vertebrates by predicting Transcription Start Site (TSS) positions. DPF's algorithm uses sensors for three functional regions (promoters, exons and introns) and an Artificial Neural Network (ANN). Results on a large and diverse evaluation set indicate that DPF exhibits a superior predicting ability for TSS location compared to three other promoter-finding programs.

Original language	English
Pages (from-to)	198-199
Number of pages	2
Journal	Bioinformatics
Volume	18
Issue number	1
DOIs	https://doi.org/10.1093/bioinformatics/18.1.198
Publication status	Published - 2002
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

Access to Document

10.1093/bioinformatics/18.1.198

Cite this

@article{711703de61b74a20b08cc14e1bd32c27,

title = "Dragon promoter finder: Recognition of vertebrate RNA polymerase II promoters",

abstract = "Dragon Promoter Finder (DPF) locates RNA polymerase II promoters in DNA sequences of vertebrates by predicting Transcription Start Site (TSS) positions. DPF's algorithm uses sensors for three functional regions (promoters, exons and introns) and an Artificial Neural Network (ANN). Results on a large and diverse evaluation set indicate that DPF exhibits a superior predicting ability for TSS location compared to three other promoter-finding programs.",

author = "Bajic, {Vladimir B.} and Seah, {Seng Hong} and Allen Chong and Guanglan Zhang and Koh, {Judice L.Y.} and Vladimir Brusic",

year = "2002",

doi = "10.1093/bioinformatics/18.1.198",

language = "English",

volume = "18",

pages = "198--199",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "1",

}

TY - JOUR

T1 - Dragon promoter finder

T2 - Recognition of vertebrate RNA polymerase II promoters

AU - Bajic, Vladimir B.

AU - Seah, Seng Hong

AU - Chong, Allen

AU - Zhang, Guanglan

AU - Koh, Judice L.Y.

AU - Brusic, Vladimir

PY - 2002

Y1 - 2002

N2 - Dragon Promoter Finder (DPF) locates RNA polymerase II promoters in DNA sequences of vertebrates by predicting Transcription Start Site (TSS) positions. DPF's algorithm uses sensors for three functional regions (promoters, exons and introns) and an Artificial Neural Network (ANN). Results on a large and diverse evaluation set indicate that DPF exhibits a superior predicting ability for TSS location compared to three other promoter-finding programs.

AB - Dragon Promoter Finder (DPF) locates RNA polymerase II promoters in DNA sequences of vertebrates by predicting Transcription Start Site (TSS) positions. DPF's algorithm uses sensors for three functional regions (promoters, exons and introns) and an Artificial Neural Network (ANN). Results on a large and diverse evaluation set indicate that DPF exhibits a superior predicting ability for TSS location compared to three other promoter-finding programs.

UR - http://www.scopus.com/inward/record.url?scp=0036166744&partnerID=8YFLogxK

U2 - 10.1093/bioinformatics/18.1.198

DO - 10.1093/bioinformatics/18.1.198

M3 - Article

C2 - 11836231

AN - SCOPUS:0036166744

SN - 1367-4803

VL - 18

SP - 198

EP - 199

JO - Bioinformatics

JF - Bioinformatics

IS - 1

ER -

Dragon promoter finder: Recognition of vertebrate RNA polymerase II promoters

Abstract

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this