QSARs on the depuration rate constants of polycyclic aromatic hydrocarbons in Elliptio complanata

Dan Wu, Xinhui Liu, Lei Wang, Liang Wang, Mingzhu Xu, Tao Sun, Zhifeng Yang, Junliang Zhou

Research output: Journal PublicationArticlepeer-review

2 Citations (Scopus)

Abstract

Using quantum chemical descriptors and partial least squares (PLS) regression, a quantitative structure-activity relationships (QSARs) model was developed to predict the depuration rate constants (kd) of polycyclic aromatic hydrocarbons (PAHs) for mussels, Elliptio complanata (log kd=-2.1406±0.6013DE-2.0767 × 10-3 Mw-0.201 EHOMO). With a high cumulative cross-validated regression coefficient value (Qcum2) of 0.927 and low standard deviation (SD) of 0.065, the model obtained by the training set shows a good predictive ability, and it is validated to be robust by predicting the test set. Among 20 quantum chemical descriptors, the dielectric energy (DE), the molecular weight (Mw), and the highest occupied molecular orbital energy (EHOMO) are the key descriptors governing the logkd values in the model. Increase in the DE or decrease in the Mw values leads to the increase in logkd, indicating the van der Waals interactions and steric hindrance effect on the depuration process. Decrease in the EHOMO values results in increasing the logkd values, implying important roles the molecular orbital energies may play in the biological depuration of PAHs in mussels.

Original languageEnglish
Pages (from-to)537-541
Number of pages5
JournalQSAR and Combinatorial Science
Volume28
Issue number5
DOIs
Publication statusPublished - 2009
Externally publishedYes

Keywords

  • Depuration
  • Mussels
  • PAHs
  • QSARs
  • Quantum chemical descriptors

ASJC Scopus subject areas

  • Drug Discovery
  • Computer Science Applications
  • Organic Chemistry

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