ACGM: Attribute-Centric Graph Modeling Network for Concurrent Missing Tabular Data Imputation and COVID-19 Prognosis

Zhuoru Wu, Wenting Chen, Xuechen Li, Filippo Ruffini, Shaonan Liu, Lorenzo Tronchin, Domenico Albano, Eliodoro Faiella, Deborah Fazzini, Domiziana Santucci, Xiaoling Luo, Valerio Guarrasi, Paolo Soda, Linlin Shen

Research output: Journal PublicationArticlepeer-review

Abstract

COVID-19 prognosis using clinical tabular data faces significant challenges due to missing values and class imbalance issues. Existing methods often overlook the complex high-order interrelationship among clinical attributes and struggle with training stability on imbalanced datasets. We propose ACGM, an attribute-centric graph modeling network that simultaneously addresses missing data imputation and COVID-19 prognosis. ACGM consists of three key modules: an attributes preprocessing module (APM) for coarse-grained imputation initialization, a graph-enhanced attributes imputation module (GEAIM) that models high-order inter-attribute relationships through graph structures, and a graph-enhanced disease prognosis module (GEDPM) that leverages these complex attribute interactions for final prediction. GEAIM and GEDPM employ a mean-teacher strategy with attributes graph matching to preserve high-order relationships, enhance training stability, and maintain structural integrity of attribute interactions. Extensive experiments are conducted on four public COVID-19 tabular datasets, demonstrating the superiority of our ACGM over existing methods. Through comprehensive interpretability analysis, we identify that attributes such as LDH, Difficulty In Breathing, and SaO2 significantly impact COVID-19 prognosis, aligning well with clinical insights and radiologist assessments.

Original languageEnglish
JournalIEEE Journal of Biomedical and Health Informatics
DOIs
Publication statusAccepted/In press - 2025
Externally publishedYes

Keywords

  • attribute-centric
  • COVID-19 prognosis
  • graph
  • missing tabular data imputation

ASJC Scopus subject areas

  • Computer Science Applications
  • Health Informatics
  • Electrical and Electronic Engineering
  • Health Information Management

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